Web-servers
From Proteinfunction.net
Contents |
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GOblet
- http://goblet.molgen.mpg.de/cgi-bin/goblet/webapp-goblet.cgi?menu=Intro
- It uses a variety of different protein databases(human, murines, invertebrates, plants, sp-trembl) and their respective GO mappings
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GoFigure
- http://udgenome.ags.udel.edu/gofigure/
- It accepts an input DNA or protein sequence, and uses BLAST to identify homologous sequences in GO annotated DBs. Minimum covering graph construction technique is used.
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GOPET
- http://genius.embnet.dkfz-heidelberg.de/menu/biounit/open-husar
- Marchine learning for a set of proteins from different organisms is used to predict protein function. It gives predicted function with formalised confidence values.
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GOtcha
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InterProScan
- http://www.ebi.ac.uk/InterProScan/
- An integration platform for the signature-recognition methods in InterPro.
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JAFA
- http://jafa.burnham.org/
- JAFA (Joined Assembly of Function Annotations) is a protein function annotation meta-server.
- It queries five function prediction server : GOFigure, GOtcha, GOblet, InterProScan and PhydBac2.
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PFP
- PFP is an automated protein function prediction server developed by Kihara Lab at Purdue University.
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Phydbac2
- Phydbac(phylogenomic display of bacterial genes) implemented a method of phylogenomic profiling using a distance measure based on normalized BLAST scores.
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ProFunc
- ProFunc predicts protein function from 3D structure.
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ProKnow
- http://www.doe-mbi.ucla.edu/Services/ProKnow/
- Predict protein function using various features from structure or sequence of protein
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ProteomeAnalyst
- http://www.cs.ualberta.ca/~bioinfo/PA/
- Predict the properties of protein including GO terms using marchine learned classifiers
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ProtoNet
- http://www.protonet.cs.huji.ac.il/
- ProtoNet predict protein functions based on their location within ProtoNet clustering of proteins.
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SIFTER
- http://sifter.berkeley.edu/
- Using bayesian phylogenetic relationship
